Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs362271 | chr4:3235518 | C/T | 0.0001 | 490 | 16.83 | 14.13 | 15.17 | KM Plot |
| THCA | rs362272 | chr4:3234980 | C/T | 6.39E-5 | 490 | 16.8 | 14.23 | 14.73 | KM Plot |
| THCA | rs362273 | chr4:3227419 | A/G | 0.000104 | 480 | 16.67 | 14.08 | 15.17 | KM Plot |
| THCA | rs362275 | chr4:3224602 | C/T | 7.69E-5 | 486 | 16.8 | 14.08 | 15.17 | KM Plot |
| THCA | rs362306 | chr4:3242100 | C/T | 3.1E-5 | 490 | 16.67 | 14.37 | 14.3 | KM Plot |
| THCA | rs362309 | chr4:3240915 | G/C | 8.94E-5 | 477 | 16.8 | 14.55 | 14.73 | KM Plot |
| THCA | rs362314 | chr4:3235241 | A/G | 4.7E-5 | 477 | 16.87 | 14.72 | 14.73 | KM Plot |
| THCA | rs362319 | chr4:3224933 | T/G | 0.000145 | 490 | 17 | 14.55 | 14.85 | KM Plot |
| THCA | rs362331 | chr4:3215835 | T/C | 0.000218 | 484 | 17.13 | 14.37 | 14.85 | KM Plot |
| THCA | rs362336 | chr4:3213832 | G/A | 2.44E-6 | 486 | 16.73 | 14.13 | 15.17 | KM Plot |
| THCA | rs363063 | chr4:3141488 | G/A | 0.000126 | 484 | 17.3 | 14.37 | 14.73 | KM Plot |
| THCA | rs363064 | chr4:3141410 | C/T | 7.38E-5 | 489 | 16.83 | 14.13 | 14.73 | KM Plot |
| THCA | rs363088 | chr4:3210330 | A/T | 0.000133 | 485 | 16.87 | 13.68 | 14.73 | KM Plot |
| THCA | rs363092 | chr4:3196029 | A/C | 0.000122 | 490 | 14.5 | 14.63 | 17.13 | KM Plot |
| THCA | rs363099 | chr4:3162056 | C/T | 0.000157 | 486 | 17.03 | 14.03 | 16.08 | KM Plot |